Volume 16 Supplement 1

Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics: medical informatics and decision making

Research

Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. The articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.

Melbourne, Australia23 October 2015

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Edited by Min Song, Doheon Lee and Karin M. Verspoor.

Related articles have been published in a supplement to BMC Bioinformatics.

Discovery of prostate specific antigen pattern to predict castration resistant prostate cancer of androgen deprivation therapy

Prostate specific antigen (PSA) is an important biomarker to monitor the response to the treatment, but has not been fully utilized as a whole sequence. We used a longitudinal biomarker PSA to discover a new p...

Authors: Yejin Kim, Yong Hyun Park, Ji Youl Lee, In Young Choi and Hwanjo Yu

Citation: BMC Medical Informatics and Decision Making 2016 16(Suppl 1):63

Content type: Research Published on: 18 July 2016
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Prognostic factor analysis for breast cancer using gene expression profiles

The survival of patients with breast cancer is highly sporadic, from a few months to more than 15 years. In recent studies, the gene expression profiling of tumors has been used as a promising means of predict...

Authors: Soobok Joe and Hojung Nam

Citation: BMC Medical Informatics and Decision Making 2016 16(Suppl 1):56

Content type: Research Published on: 18 July 2016
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Privacy preserving data anonymization of spontaneous ADE reporting system dataset

To facilitate long-term safety surveillance of marketing drugs, many spontaneously reporting systems (SRSs) of ADR events have been established world-wide. Since the data collected by SRSs contain sensitive pe...

Authors: Wen-Yang Lin, Duen-Chuan Yang and Jie-Teng Wang

Citation: BMC Medical Informatics and Decision Making 2016 16(Suppl 1):58

Content type: Research Published on: 18 July 2016
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Establishing a baseline for literature mining human genetic variants and their relationships to disease cohorts

The Variome corpus, a small collection of published articles about inherited colorectal cancer, includes annotations of 11 entity types and 13 relation types related to the curation of the relationship between...

Authors: Karin M. Verspoor, Go Eun Heo, Keun Young Kang and Min Song

Citation: BMC Medical Informatics and Decision Making 2016 16(Suppl 1):68

Content type: Research Published on: 18 July 2016
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In-silico interaction-resolution pathway activity quantification and application to identifying cancer subtypes

Identifying subtypes of complex diseases such as cancer is the very first step toward developing highly customized therapeutics on such diseases, as their origins significantly vary even with similar physiolog...

Authors: Sungwon Jung

Citation: BMC Medical Informatics and Decision Making 2016 16(Suppl 1):55

Content type: Research Published on: 18 July 2016
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The effect of word sense disambiguation accuracy on literature based discovery

The volume of research published in the biomedical domain has increasingly lead to researchers focussing on specific areas of interest and connections between findings being missed. Literature based discovery ...

Authors: Judita Preiss and Mark Stevenson

Citation: BMC Medical Informatics and Decision Making 2016 16(Suppl 1):57

Content type: Research Published on: 18 July 2016
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Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics: medical informatics and decision making

Research

Discovery of prostate specific antigen pattern to predict castration resistant prostate cancer of androgen deprivation therapy

Prognostic factor analysis for breast cancer using gene expression profiles

Privacy preserving data anonymization of spontaneous ADE reporting system dataset

Establishing a baseline for literature mining human genetic variants and their relationships to disease cohorts

In-silico interaction-resolution pathway activity quantification and application to identifying cancer subtypes

The effect of word sense disambiguation accuracy on literature based discovery

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