Method | R package (version) | Prediction types |
---|---|---|
Random survival forests (rsf) | ranger (0.13.1) | For C-index calculation: Sum of the values of the bootstrap ensemble cumulative hazard function [27] \(\:{H}_{e}^{*}\left(t\right|{\varvec{x}}_{i})\) calculated at all unique death times. For integrated Brier score: Survival function estimated using \(\:{\text{e}\text{x}\text{p}(-H}_{e}^{*}\left(t\right|{\varvec{x}}_{i}\left)\right)\) |
Block forests (bf) | blockForest (0.2.4) | See rsf above. |
Lasso (lasso) | glmnet (4.1-3) | For C-index calculation: Linear predictor \(\:{\varvec{x}}_{i}^{T}\widehat{\varvec{\beta\:}}\) For integrated Brier score: Survival function estimated as follows: \(\:{\text{e}\text{x}\text{p}(-\widehat{{\Lambda\:}}}_{0}\left(t\right)\:\text{e}\text{x}\text{p}\left({\varvec{x}}_{i}^{T}\widehat{\varvec{\beta\:}}\right))\), where \(\:{\widehat{{\Lambda\:}}}_{0}\left(t\right)\) is an estimate of the baseline cumulative hazard function obtained using the Efron estimator |
IPF-LASSO (ipflasso) | ipflasso (1.1) | See lasso above. |
Priority-Lasso (prioritylasso) | prioritylasso (0.2.5) | See lasso above. |