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Table 2 General NLP-related tags

From: From admission to discharge: a systematic review of clinical natural language processing along the patient journey

Category

Tags

Data type

D1: All patient related records

D2: Clinical studies

D3: Registry data

D4: Protein data

D5: Genome data

D6: Forum posts, chatlogs, social media

D7: Speech data, dialogue data

D8: Image data

D9: Knowledge graph, thesaurus

D10: Medical online information (Wikipedia, drug information, FAQs, etc.)

D11: Patents

D12: News articles and press releases

D13: Clinical guidelines

Data language

free text, e.g. English, German

Task

T1: Classification

T2: Information extraction

T3: Clustering

T4: Text generation

T5: Embeddings/representations

T6: New dataset creation

T7: Question answering

T8: Text summarization

T9: Translation

T10: Reinforcement learning

T11: Recommender system

T12: Natural Language Inference and entailment

T13: Topic model

T14: Probing

T15: Ranking

Secondary task

S1: Explainability

S2: Domain adaptation

S3: Bias, fairness

S4: Resource-awareness

Model type

M1: Transformer-variants (BERT, RoBERTa etc.)

M2: Convolutional Neural Nets (CNNs)

M3: Recurrent Neural Nets (RNN, LSTM)

M4: Statistical models (Bayes, conditional probabilities, CRF)

M5: Graph Neural Networks (GNNs)

M6: Dimension reduction

M7: Graphical models (PGM)

M8: Generative Adversarial Networks (GANs)

M9: Rule-based models

M10: Decision trees, Random Forest

M11: Support Vector Machines (SVM)

M12: K-nearest neighbors (kNN)

M13: Pointer generator model

M14: Feedforward neural network

M15: Logistic regression

M16: Linear regression

 

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