Table 4 Overview of biomedical relation extraction applications
Study | Data sources | Model architecture | Biomedical tasks |
|---|---|---|---|
[64] | PubMed | BioPREP based on BioBERT | Detection of Xanthium compound-diabetes associations. |
BioPrep [65] | SemMedDB | BioBERT, SciBERT | General biomedical predicate classification |
[66] | Wikipedia and Mayo Clinic articles from DISNET | BioBERT | Creation of disease network |
[67] | DrugTargetCommons, ChEMBL, DisGeNet, PubMed | SciBERT, BioBERT, BioMed-RoBERTa, BlueBERT | Prediction of drug-target interactions |
KSM [68] | PubMed, BioCreative VI Track 4 PPI extraction task dataset | Multiple transformers with knowledge selector | Identification of protein-protein interactions |
Patent_BERT [69] | CLEF 2020 - ChEMU Task data, Chemical Patents | BioBERT | Extraction of chemical reactions |
[70] | Drug-adverse event corpus, PubMed | RoBERTa | Identification of drug-adverse effect relations |
[71] | PubMed | BioBERT | Identification of plant-phenotype relations |