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Table 3 Performance of the fine-tuned models. Each pre-trained model is trained seven times. From Train1 to Train7, new training images are added one at a time in the order shown in Table 1. For train7, two performance metrics are shown: mAP and ARI, where ARI is the average Adjusted Rand Index over seven test images

From: Optimizing deep learning-based segmentation of densely packed cells using cell surface markers

 

mAP

ARI

 

Pretrained

Train1

Train2

Train3

Train4

Train5

Train6

Train7

Train7

Cellpose

cyto

0.518

0.453

0.607

0.633

0.657

0.668

0.691

0.694

0.815

cyto2

0.478

0.460

0.616

0.632

0.652

0.661

0.689

0.689

0.817

tissuenet

0.001

0.471

0.598

0.604

0.630

0.647

0.671

0.676

0.813

livecell

0.211

0.420

0.597

0.591

0.635

0.648

0.665

0.673

0.812

none

 

0.293

0.510

0.510

0.576

0.589

0.616

0.615

0.791

DeepCell

tn_nuclear

0.387

0.373

0.381

0.380

0.392

0.426

0.452

0.488

0.668

tn_cyto

0.140

0.277

0.349

0.337

0.357

0.355

0.423

0.428

0.648

MR-CNN

jacs

0.350

0.530

0.542

0.519

0.548

0.558

0.576

0.576

0.706